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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8832460_8833202_R

Intron Information:

Intron Rank:
155224
Intron Class:
major
Intron Phase:
Intron Coordinates:
8832460 - 8833202
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTGTTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.6
0.53
0.8
66.1
35.2
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
47.6
-0.1
1.9
66.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030997
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045835
8821867 - 8834336
12470