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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8883682_8885002_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8883682 - 8885002
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATTCTTCATCT
Flanking Amino Acid:
FADIELSRNEALAALLRDGE
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
54.8
0.23
1.8
73.17
43.8

Associated Gene:

Gene:
PLS3
Ensembl Gene ID:
ENSAPLG00000011074
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026782
8876966 - 8920248
43283
ENSAPLT00000011603
8876966 - 8920248
43283