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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8887289_8889839_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8887289 - 8889839
Intron Length:
2551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTGTCTAACA
Flanking Amino Acid:
GKISFEEFVYIFQEVKSSDI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
0.9
67.5
37.6
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
60.6
0.33
2.1
79.78
36.5

Associated Gene:

Gene:
PLS3
Ensembl Gene ID:
ENSAPLG00000011074
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011603
8876966 - 8920248
43283
ENSAPLT00000026782
8876966 - 8920248
43283