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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8967985_8968752_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8967985 - 8968752
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGAG
5'SS Class:
major
3'SS Sequence:
CTTTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
CAGGACTGACTT
Flanking Amino Acid:
RFNFRAMANQTSLTLDERFS
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.3
42
Major BPS
55.9
0.15
1.2
49
38
Major PPT
83.7
0.76
0.7
77.7
24.2
Minor 5ss
26.5
-2.7
3.7
36.3
48.1
Minor BPS
40.9
-0.6
1.8
50.4
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011874
8967889 - 8979775
11887