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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8968865_8969533_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8968865 - 8969533
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTGCTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAC
U12 Branch Point Sequence:
GACTGCAGACCT
Flanking Amino Acid:
VANPQAGQANVPGSKRPFLR
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
49.6
-0
1.1
46.4
38.9
Major PPT
73.7
0.53
0.9
65.4
41.1
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
39.7
-0.7
2.2
55.78
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011874
8967889 - 8979775
11887