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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8969735_8970145_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8969735 - 8970145
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCAGTACA
5'SS Class:
major
3'SS Sequence:
TATTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAA
Flanking Amino Acid:
RFSKANFQRGIDANAEGKLP
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
71.6
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.2
0.77
0.8
78.5
34.2
Minor 5ss
31
-2.2
2.4
27.5
35.4
Minor BPS
65.2
0.47
1.3
69.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011874
8967889 - 8979775
11887