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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8970231_8971009_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8970231 - 8971009
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CCTTTCTTACCA
Flanking Amino Acid:
AAASTHAPGRSRPFLLNRGP
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
79.8
0.67
0.8
73.6
35.7
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
63.6
0.42
1.7
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011874
8967889 - 8979775
11887