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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8976798_8979687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8976798 - 8979687
Intron Length:
2890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCCG
5'SS Class:
major
3'SS Sequence:
CATTTTGATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCATTTTGATCT
Flanking Amino Acid:
PGAEEIDMSLDDIIKRHRKE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
57.2
47.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.9
0.45
1
62.6
43.1
Minor 5ss
32.7
-2
3.1
33.5
41.6
Minor BPS
47.4
-0.1
1.7
60.47
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011401
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011874
8967889 - 8979775
11887