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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9021485_9022637_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9021485 - 9022637
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTACC
5'SS Class:
major
3'SS Sequence:
GGCTTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
GGCTTTTTAACA
Flanking Amino Acid:
EREQIRQLRNNLESRLKVIL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.6
0.53
1
68.9
40.8
Minor 5ss
45.5
-0.5
2.4
59.9
37.5
Minor BPS
67.7
0.55
1.2
68.06
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023840
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037960
9021437 - 9024567
3131