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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9022776_9023069_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9022776 - 9023069
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTGTCTTTACAG
Flanking Amino Acid:
ASIHVPSPAVPKLSMAKCRR
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82
0.72
0.8
75.4
33.1
Minor 5ss
30.6
-2.2
2.9
38.2
41.8
Minor BPS
49.9
-0.1
1.8
55.75
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023840
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037960
9021437 - 9024567
3131