Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9023148_9024297_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9023148 - 9024297

Intron Length:

1150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCTACGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAGAT

U12 Branch Point Sequence:

GTATGTGTGACT

Flanking Amino Acid:

DACKKLGVPQLGKSESSLIH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

72.9

34.5

Major BPS

74.1

0.6

38.9

Major PPT

74.1

0.54

0.9

70.4

35.3

Minor 5ss

49.2

-0

2.5

63.9

47.7

Minor BPS

45.9

-0.2

2.4

68.05

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023840

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037960

9021437 - 9024567

3131