Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9041185_9050159_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

9041185 - 9050159

Intron Length:

8975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCATTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

AACCTTTCAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.1

43.1

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

87.6

0.85

0.8

80.3

37.1

Minor 5ss

46.1

-0.4

2.9

65.4

45.8

Minor BPS

51.5

0.13

1.5

64.84

39.6

Associated Gene:

Gene:

IL13RA2

Ensembl Gene ID:

ENSAPLG00000011907

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012398

9041125 - 9062757

21633