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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9053961_9056100_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9053961 - 9056100
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATCTTTCAACC
Flanking Amino Acid:
YRNTGDREWKVIFTRKLKFR
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
70.1
0.45
1
63.9
41.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
59.7
0.28
1.5
69.03
36

Associated Gene:

Gene:
IL13RA2
Ensembl Gene ID:
ENSAPLG00000011907
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012398
9041125 - 9062757
21633