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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9056917_9058949_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9056917 - 9058949
Intron Length:
2033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
AATGCACTGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTCCTAATG
Flanking Amino Acid:
PRGVHYGLYYWYEGLDHAEQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
53.8
0.09
1.1
44.9
41.8
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
63.1
0.27
1.7
70.09
37.3

Associated Gene:

Gene:
IL13RA2
Ensembl Gene ID:
ENSAPLG00000011907
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012398
9041125 - 9062757
21633