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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9059135_9060254_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9059135 - 9060254
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACCTTTTGACCT
Flanking Amino Acid:
LYATLRLQNLAKPSPPKQLM
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78.9
0.65
0.7
69.8
31
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
47.8
-0
1.7
61.81
42.8

Associated Gene:

Gene:
IL13RA2
Ensembl Gene ID:
ENSAPLG00000011907
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012398
9041125 - 9062757
21633