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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9061388_9061655_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9061388 - 9061655
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGAAC
5'SS Class:
major
3'SS Sequence:
TTTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTTCTTATTT
Flanking Amino Acid:
WSEWTQECISVSREEDKQLF
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
65.7
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
31.3
-2.1
3.4
38.8
41.2
Minor BPS
66.2
0.59
1.5
79.09
37.2

Associated Gene:

Gene:
IL13RA2
Ensembl Gene ID:
ENSAPLG00000011907
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012398
9041125 - 9062757
21633