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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9077824_9089848_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9077824 - 9089848
Intron Length:
12025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
CTCCAGTTAACC
Flanking Amino Acid:
KIAAVWTISIGISMPIPVIG
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
86
0.81
0.8
77.9
36.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
47.6
-0.2
2.2
60.61
44.6

Associated Gene:

Gene:
HTR2C
Ensembl Gene ID:
ENSAPLG00000012164
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045643
9076991 - 9288746
211756
ENSAPLT00000037631
9076991 - 9288746
211756
ENSAPLT00000012658
9076991 - 9156206
79216