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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9096799_9101416_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9096799 - 9101416
Intron Length:
4618

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAAGAACA
5'SS Class:
major
3'SS Sequence:
AGGAGTACTGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
AAATGAGTAATA
Flanking Amino Acid:
EFLGQGAAHKGRTSYSQDTR
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.2
72.7
37.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
53.7
0.08
1
44.9
41.8
Minor 5ss
23
-3.1
3.6
24.7
36.3
Minor BPS
41.3
-0.6
2.4
52.98
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030937
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021244
9096758 - 9101645
4888