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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_910604_914500_F

Intron Information:

Intron Rank:
144193
Intron Class:
major
Intron Phase:
Intron Coordinates:
910604 - 914500
Intron Length:
3897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
GCGCTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CATCACTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
65.6
40
Major BPS
71.3
0.53
1
61.3
37
Major PPT
75.4
0.57
0.9
68.7
37.2
Minor 5ss
27.5
-2.6
3.5
34.2
43.1
Minor BPS
47.8
-0
1.9
65.35
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027738
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048453
910363 - 915475
5113