Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9415972_9416182_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9415972 - 9416182

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCCTC

5'SS Class:

major

3'SS Sequence:

CTTTTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

CAGCTCTGATGT

Flanking Amino Acid:

VLITYSTVLLVLALCLQLCG

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

64.9

41.1

Major BPS

0.72

38.9

Major PPT

92.6

0.96

0.6

88.3

21.3

Minor 5ss

37.1

-1.5

3.2

47.8

42.4

Minor BPS

-0.6

1.8

50.71

43.3

Associated Gene:

Gene:

GDPD2

Ensembl Gene ID:

ENSAPLG00000012224

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012745

9406399 - 9421576

15178

ENSAPLT00000024500

9406399 - 9421319

14921