Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9420784_9421204_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9420784 - 9421204

Intron Length:

421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCATCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAACAT

U12 Branch Point Sequence:

GAAGCACTAACA

Flanking Amino Acid:

LTILWAFLLLKKCSQRRQPV

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

81.6

33.2

Major BPS

58.7

0.22

1.2

Major PPT

69.4

0.44

0.8

61.3

34.7

Minor 5ss

45.5

-0.5

2.8

58.6

40.2

Minor BPS

46.3

-0.2

56.82

41.3

Associated Gene:

Gene:

GDPD2

Ensembl Gene ID:

ENSAPLG00000012224

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024500

9406399 - 9421319

14921

ENSAPLT00000012745

9406399 - 9421576

15178