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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9445303_9448419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9445303 - 9448419
Intron Length:
3117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
GTTTTGAAGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAGTTTTGAAGG
Flanking Amino Acid:
LPLPVLTLCLS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
68
35.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.5
0.3
1.2
59.5
45.2
Minor 5ss
34.9
-1.7
3.5
50.5
40.9
Minor BPS
45.5
-0.4
1.7
45.35
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017095
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042172
9445300 - 9456656
11357