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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9448569_9453870_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9448569 - 9453870
Intron Length:
5302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TGTTCCTTCACA
Flanking Amino Acid:
RTSEKRSLYVRALFDYDRTR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
81.8
0.72
0.8
76.1
32.5
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
75.9
0.81
1.7
84.27
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017095
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042172
9445300 - 9456656
11357