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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9454048_9454198_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9454048 - 9454198
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
AACTCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CCTCATTTAACT
Flanking Amino Acid:
EQIGVIPSKKRVEKKERARL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
63.8
0.31
0.9
60.5
35.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
62
0.45
1.6
73.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017095
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042172
9445300 - 9456656
11357