Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9454275_9456623_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9454275 - 9456623

Intron Length:

2349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GGGCTCACAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

TGTCCTGGAACC

Flanking Amino Acid:

ARTGMIESNRTPACGMLENL

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.8

35.5

Major BPS

52.1

0.05

1.3

41.8

Major PPT

55.8

0.13

48.9

39.2

Minor 5ss

34.9

-1.7

3.2

42.4

44.3

Minor BPS

48.5

-0.1

2.1

65.58

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042172

9445300 - 9456656

11357