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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9473803_9474819_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9473803 - 9474819
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAACA
Flanking Amino Acid:
KQTAIDAVKFSKCLHSLINL
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
1
86.4
29.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.8
0.65
1
74.2
39.4
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
68.3
0.57
2
84.69
35.1

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072
ENSAPLT00000013954
9470686 - 9488535
17850