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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9480782_9481420_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9480782 - 9481420
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAACT
Flanking Amino Acid:
SKVVVENEEKRNKDIKSMLT
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.5
0.64
0.8
70.7
34.7
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
64.6
0.54
1.9
88.67
36.3

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072
ENSAPLT00000013954
9470686 - 9488535
17850