About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9481475_9482103_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9481475 - 9482103
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGATT
5'SS Class:
major
3'SS Sequence:
TTCTCATATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
RDCRQVFAALKCLVRLVLSK
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
81.4
32
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.9
0.67
0.9
78
34.4
Minor 5ss
34.5
-1.8
3.4
48.9
41.5
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072
ENSAPLT00000013954
9470686 - 9488535
17850