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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9483861_9484570_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9483861 - 9484570
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CATTACTGAATT
Flanking Amino Acid:
CYLHLKEVDKAKEAVKEAER
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
74.9
0.56
0.9
69.8
35.8
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
60.2
0.4
1.7
75.29
41.2

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072
ENSAPLT00000013954
9470686 - 9488535
17850