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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9486099_9486809_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9486099 - 9486809
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGGGAC
5'SS Class:
major
3'SS Sequence:
GTCTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTGTCTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
61.2
37.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.8
0.74
0.8
77.4
35.6
Minor 5ss
32
-2.1
3.4
40.9
45.8
Minor BPS
58.1
0.34
1.7
74.69
42.7

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072