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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9486896_9487605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9486896 - 9487605
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCTGTATC
5'SS Class:
major
3'SS Sequence:
ATTATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGCATTATCT
Flanking Amino Acid:
AKQKVEEIIIGHYTGKQLLS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
77.9
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.8
81.7
35.3
Minor 5ss
41.8
-0.9
2.6
54.4
42.8
Minor BPS
61.7
0.45
2
85.15
41.2

Associated Gene:

Gene:
TEX11
Ensembl Gene ID:
ENSAPLG00000013369
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032157
9470686 - 9487757
17072
ENSAPLT00000013954
9470686 - 9488535
17850