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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9502409_9503069_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
9502409 - 9503069
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GACTGTGTCTCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTTTCCTTAGAC
Flanking Amino Acid:
KKTPCGFCFVEYYTRADAEH
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
50.4
41.8
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
65.4
0.35
1
61
44.4
Minor 5ss
89.5
1.33
1
80.9
33.1
Minor BPS
73.5
0.72
1.6
84.09
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013779
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014355
9499450 - 9503918
4469