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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9507846_9508242_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9507846 - 9508242
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCAGGCGGG
5'SS Class:
major
3'SS Sequence:
GCTGCAGCTGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
GGTGCTGCAGCT
Flanking Amino Acid:
EPWNPGNPPRGLLPALVPQS
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
57.3
44.5
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
46.6
-0.1
1.7
46.9
40.6
Minor 5ss
23.6
-3
4.2
28.2
44
Minor BPS
39.7
-0.7
2.3
57.46
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013791
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014370
9506836 - 9508279
1444