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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9513413_9513606_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9513413 - 9513606
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACCA
5'SS Class:
major
3'SS Sequence:
CTCCCCACGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
AAGCCCTGAGCT
Flanking Amino Acid:
AVGSLCALSTSLLGSMFPMP
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.3
40.7
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
63.2
0.3
1
58.4
31.5
Minor 5ss
30.9
-2.2
3.3
39.8
45.7
Minor BPS
50.3
0.09
1.7
66.73
43.1

Associated Gene:

Gene:
SLC7A3
Ensembl Gene ID:
ENSAPLG00000014008
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014629
9510062 - 9516973
6912
ENSAPLT00000038703
9510062 - 9516973
6912