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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9515441_9515593_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9515441 - 9515593
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CCTACCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
GTCCCCAAGACT
Flanking Amino Acid:
LGVGSTLGAGVYVTVGEIWA
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
62.9
41.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
75.9
0.58
0.8
68.4
31.8
Minor 5ss
36.2
-1.6
3.5
50.7
45.7
Minor BPS
47.1
-0.1
2
66.69
43.8

Associated Gene:

Gene:
SLC7A3
Ensembl Gene ID:
ENSAPLG00000014008
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038703
9510062 - 9516973
6912