Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9550844_9551240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9550844 - 9551240

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGCGAA

U12 Branch Point Sequence:

CTTTCCTGCAGT

Flanking Amino Acid:

EDQTQVFRVQDYSWEDHGFS

Intron Amino Acid Position:

308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

43.8

-0.3

1.4

35.9

Major PPT

71.5

0.48

0.9

64.7

36.6

Minor 5ss

29.9

-2.3

3.4

45.6

Minor BPS

50.9

0.11

2.2

76.42

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025982

9546168 - 9554674

8507