Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9555376_9555448_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9555376 - 9555448

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAGGCGCA

5'SS Class:

major

3'SS Sequence:

GCAGTGCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTGAC

U12 Branch Point Sequence:

GTGGGTGTGACG

Flanking Amino Acid:

YVCRVELGTPGTAQELASRT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

57.2

42.2

Major BPS

53.6

0.09

1.4

48.8

46.3

Major PPT

58.9

0.2

50.4

39.1

Minor 5ss

35.7

-1.6

3.6

47.6

Minor BPS

38.3

-1

2.3

41.97

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021497

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017815

9551508 - 9557025

5518