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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9556674_9556755_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
9556674 - 9556755
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ACCTCCTGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.8
76.2
39.9
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
51.4
0.03
1.6
62.2
34.7
Minor 5ss
34.6
-1.8
2.9
44.7
43.1
Minor BPS
52.7
0.06
1.8
61.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017284
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024737
9555986 - 9559203
3218
Gene:
Ensembl Gene ID:
ENSAPLG00000021497
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017815
9551508 - 9557025
5518