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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9557026_9557113_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9557026 - 9557113
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
GGGCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GGCTCCTCACAG
Flanking Amino Acid:
CGLGQKHHQQGSRGGAAAEV
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
57.9
46.7
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
65.3
0.35
1
57.2
38.7
Minor 5ss
30.7
-2.2
3.3
31.9
42.4
Minor BPS
44.5
-0.5
2
46.62
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017284
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024737
9555986 - 9559203
3218