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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9557780_9557955_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9557780 - 9557955
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCTGCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTAAC
U12 Branch Point Sequence:
GCCCCCGTAACC
Flanking Amino Acid:
AHRQLLPLLLVRDQVAHAGV
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
69.5
36.3
Major BPS
49.8
-0
1.2
52.9
39.1
Major PPT
66.1
0.36
1
59.7
35.6
Minor 5ss
32.7
-2
3.4
40.9
40.8
Minor BPS
50.4
-0
2.1
60.42
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017284
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024737
9555986 - 9559203
3218