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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9560445_9560649_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9560445 - 9560649
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCTGAGG
5'SS Class:
major
3'SS Sequence:
TCCCCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GGCACACTGACC
Flanking Amino Acid:
VYPQDPKQKEDELTALNVKQ
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.1
53.4
45
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
72.4
0.5
0.7
69.1
24.7
Minor 5ss
25.2
-2.8
3.1
31.2
42.5
Minor BPS
43.5
-0.5
1.9
50.61
39.4

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407