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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9566259_9568315_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9566259 - 9568315
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTATCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTTGCTGAATG
Flanking Amino Acid:
VVYGLSCILQSIILCCPSAL
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
66.3
45.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.4
0.64
0.9
72.6
37.3
Minor 5ss
33.1
-1.9
3.1
41.6
45
Minor BPS
56.9
0.08
2
66.67
41.3

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407