About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9570724_9571377_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9570724 - 9571377
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
GCTGTCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCTCTGATAAGT
Flanking Amino Acid:
QFLDTQAPMLTDPGKENEKV
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.7
Major BPS
79
0.72
1
69
38.9
Major PPT
77.7
0.62
0.9
73.4
37.1
Minor 5ss
43.8
-0.7
2.5
54.1
37.3
Minor BPS
40.6
-0.6
2.3
58.32
44.5

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407