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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9571608_9572057_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9571608 - 9572057
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAA
U12 Branch Point Sequence:
GAGGTGTAAAGC
Flanking Amino Acid:
TEGNSGIKLEDTGLSEPMDI
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
57.5
0.19
1.4
61.7
43.1
Major PPT
80.8
0.69
0.8
72.9
37.4
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
35.5
-1.1
2.3
38.73
40.4

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407