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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9573710_9574632_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9573710 - 9574632
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTAACTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GTCCTCCTAACT
Flanking Amino Acid:
VLNRKSTAETGGEEGQKRKK
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
64.8
0.33
1
61.7
39.6
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
58.3
0.34
1.7
74.74
41.6

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407