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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9579609_9580281_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9579609 - 9580281
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TTTTCTTTACAT
Flanking Amino Acid:
CAAIPSLLNAACSEQDSEPG
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
79.5
0.66
0.8
76.8
30.8
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
70.5
0.72
1.7
88.96
35.8

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407