About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9585077_9585386_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9585077 - 9585386
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TCGCTATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TCTTCGCTATCT
Flanking Amino Acid:
QLMIKQTANNEMNSLLENIA
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
78.3
32.5
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
75.2
0.57
0.9
66
39.9
Minor 5ss
40.7
-1
2.9
51.8
38.6
Minor BPS
47.7
-0
2.5
76.35
46.1

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407