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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9585548_9585637_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9585548 - 9585637
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCTTTTCACTT
Flanking Amino Acid:
PASNKSKPILSSLERSGVWL
Intron Amino Acid Position:
1406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.4
0.55
1
68.1
42.3
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
47.5
-0.1
1.8
63.62
41.8

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407