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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9585997_9586236_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9585997 - 9586236
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTTCTAAATC
Flanking Amino Acid:
LTSLYSQVQQIVTNWREDQY
Intron Amino Acid Position:
1498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.8
0.45
0.9
67.3
37.7
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
57.9
0.23
1.7
64.76
42

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407