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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9586327_9586781_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9586327 - 9586781
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTAAACT
Flanking Amino Acid:
HEALKLRLNLVGGMFDTVQR
Intron Amino Acid Position:
1528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.5
41.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80.5
0.69
0.9
80.8
31.2
Minor 5ss
35.8
-1.6
3
45.5
44.6
Minor BPS
62.2
0.46
2
84.76
41.8

Associated Gene:

Gene:
MED12
Ensembl Gene ID:
ENSAPLG00000014908
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015716
9560346 - 9591752
31407